If your Veeqo account has more than one Direct/Retail store added then you have to select which store you would like to use when creating a new manual order.

To enable this feature go to Settings>Users and click on your username. Hit the Edit icon. Scroll down to Default Store, choose your preferred one and hit Save.

Now when you create a new order this store is selected by default. You can still go ahead and choose another store if you prefer.

For more information check out This Guide.